diff --git a/Core/FileSystems/MetaFileSystem.cpp b/Core/FileSystems/MetaFileSystem.cpp
index b8ebc9238e..6ecd36226c 100644
--- a/Core/FileSystems/MetaFileSystem.cpp
+++ b/Core/FileSystems/MetaFileSystem.cpp
@@ -298,6 +298,15 @@ void MetaFileSystem::UnmountAll() {
 	currentDir.clear();
 }
 
+void MetaFileSystem::Unmount(std::string prefix) {
+	for (auto iter = fileSystems.begin(); iter != fileSystems.end(); iter++) {
+		if (iter->prefix == prefix) {
+			fileSystems.erase(iter);
+			return;
+		}
+	}
+}
+
 bool MetaFileSystem::Remount(std::string prefix, std::shared_ptr<IFileSystem> system) {
 	std::lock_guard<std::recursive_mutex> guard(lock);
 	for (auto &it : fileSystems) {
diff --git a/Core/FileSystems/MetaFileSystem.h b/Core/FileSystems/MetaFileSystem.h
index 84ea60a44a..f980fc1900 100644
--- a/Core/FileSystems/MetaFileSystem.h
+++ b/Core/FileSystems/MetaFileSystem.h
@@ -62,6 +62,7 @@ public:
 	bool Remount(std::string prefix, std::shared_ptr<IFileSystem> system);
 
 	void UnmountAll();
+	void Unmount(std::string prefix);
 
 	// The pointer returned from these are for temporary usage only. Do not store.
 	IFileSystem *GetSystem(const std::string &prefix);
diff --git a/Core/HLE/sceIo.cpp b/Core/HLE/sceIo.cpp
index 3b99c2d2d3..c856794110 100644
--- a/Core/HLE/sceIo.cpp
+++ b/Core/HLE/sceIo.cpp
@@ -775,7 +775,12 @@ void __IoShutdown() {
 	}
 	asyncDefaultPriority = -1;
 
-	pspFileSystem.UnmountAll();
+	pspFileSystem.Unmount("ms0:");
+	pspFileSystem.Unmount("fatms0:");
+	pspFileSystem.Unmount("fatms:");
+	pspFileSystem.Unmount("pfat0:");
+	pspFileSystem.Unmount("flash0:");
+	pspFileSystem.Unmount("exdata0:");
 
 	MemoryStick_Shutdown();
 	memStickCallbacks.clear();