diff --git a/GPU/GLES/DrawEngineGLES.cpp b/GPU/GLES/DrawEngineGLES.cpp
index eb8220c2b0..8364ca30ef 100644
--- a/GPU/GLES/DrawEngineGLES.cpp
+++ b/GPU/GLES/DrawEngineGLES.cpp
@@ -292,7 +292,6 @@ void DrawEngineGLES::Flush() {
 		int vertexCount;
 		int maxIndex;
 		bool useElements;
-		DecodeVerts(dec_, decoded_);
 		DecodeIndsAndGetData(&prim, &vertexCount, &maxIndex, &useElements, false);
 		gpuStats.perFrame.numVertsDrawn += vertexCount;
 
diff --git a/GPU/GLES/StencilBufferGLES.cpp b/GPU/GLES/StencilBufferGLES.cpp
index 40ca65cb35..19b94d21bb 100644
--- a/GPU/GLES/StencilBufferGLES.cpp
+++ b/GPU/GLES/StencilBufferGLES.cpp
@@ -136,7 +136,9 @@ bool FramebufferManagerGLES::ReadbackStencilbuffer(Draw::Framebuffer *fbo, int x
 	draw_->BindSamplerStates(TEX_SLOT_PSP_TEXTURE, 1, &stencilReadbackSampler_);
 
 	// We must bind the program after starting the render pass.
-	draw_->SetScissorRect(0, 0, w, h);
+	// Note: scissor to the region we're about to read back, not to (0, 0, w, h) - every caller
+	// passes (0, 0) today, but with a nonzero origin the copy below would read scissored-away pixels.
+	draw_->SetScissorRect(x, y, w, h);
 	draw_->BindPipeline(stencilReadbackPipeline_);
 
 	// Fullscreen triangle coordinates.