diff --git a/pcsx2-qt/QtHost.cpp b/pcsx2-qt/QtHost.cpp
index c38391fc60..8ba9de721a 100644
--- a/pcsx2-qt/QtHost.cpp
+++ b/pcsx2-qt/QtHost.cpp
@@ -251,7 +251,8 @@ void QtHost::SetDefaultConfig()
 	}
 
 	EmuFolders::Save(si);
-	PAD::SetDefaultConfig(si);
+	PAD::SetDefaultControllerConfig(si);
+	PAD::SetDefaultHotkeyConfig(si);
 }
 
 void QtHost::SetBaseBoolSettingValue(const char* section, const char* key, bool value)
diff --git a/pcsx2-qt/Settings/ControllerSettingsDialog.cpp b/pcsx2-qt/Settings/ControllerSettingsDialog.cpp
index d2dd07f697..72761494d3 100644
--- a/pcsx2-qt/Settings/ControllerSettingsDialog.cpp
+++ b/pcsx2-qt/Settings/ControllerSettingsDialog.cpp
@@ -206,7 +206,8 @@ void ControllerSettingsDialog::onRestoreDefaultsClicked()
 	// actually restore it
 	{
 		auto lock = Host::GetSettingsLock();
-		PAD::SetDefaultConfig(*Host::Internal::GetBaseSettingsLayer());
+		PAD::SetDefaultControllerConfig(*Host::Internal::GetBaseSettingsLayer());
+		PAD::SetDefaultHotkeyConfig(*Host::Internal::GetBaseSettingsLayer());
 		QtHost::QueueSettingsSave();
 	}
 
diff --git a/pcsx2/Frontend/FullscreenUI.cpp b/pcsx2/Frontend/FullscreenUI.cpp
index fb3e4f78f4..9c6fdfb164 100644
--- a/pcsx2/Frontend/FullscreenUI.cpp
+++ b/pcsx2/Frontend/FullscreenUI.cpp
@@ -2918,7 +2918,8 @@ void FullscreenUI::ResetControllerSettings()
 {
 	SettingsInterface* dsi = GetEditingSettingsInterface();
 
-	PAD::SetDefaultConfig(*dsi);
+	PAD::SetDefaultControllerConfig(*dsi);
+	PAD::SetDefaultHotkeyConfig(*dsi);
 	ShowToast(std::string(), "Controller settings reset to default.");
 }
 
diff --git a/pcsx2/PAD/Host/PAD.cpp b/pcsx2/PAD/Host/PAD.cpp
index ee9ee1aa22..038aaeca36 100644
--- a/pcsx2/PAD/Host/PAD.cpp
+++ b/pcsx2/PAD/Host/PAD.cpp
@@ -290,7 +290,7 @@ const char* PAD::GetDefaultPadType(u32 pad)
 	return (pad == 0) ? "DualShock2" : "None";
 }
 
-void PAD::SetDefaultConfig(SettingsInterface& si)
+void PAD::SetDefaultControllerConfig(SettingsInterface& si)
 {
 	si.ClearSection("InputSources");
 	si.ClearSection("Hotkeys");
@@ -324,7 +324,10 @@ void PAD::SetDefaultConfig(SettingsInterface& si)
 	// PCSX2 Controller Settings - Controller 1 / Controller 2 / ...
 	// Use the automapper to set this up.
 	MapController(si, 0, InputManager::GetGenericBindingMapping("Keyboard"));
+}
 
+void PAD::SetDefaultHotkeyConfig(SettingsInterface& si)
+{
 	// PCSX2 Controller Settings - Hotkeys
 
 	// PCSX2 Controller Settings - Hotkeys - General
diff --git a/pcsx2/PAD/Host/PAD.h b/pcsx2/PAD/Host/PAD.h
index b1d64123ee..93f231afc6 100644
--- a/pcsx2/PAD/Host/PAD.h
+++ b/pcsx2/PAD/Host/PAD.h
@@ -137,7 +137,8 @@ namespace PAD
 	void LoadConfig(const SettingsInterface& si);
 
 	/// Restores default configuration.
-	void SetDefaultConfig(SettingsInterface& si);
+	void SetDefaultControllerConfig(SettingsInterface& si);
+	void SetDefaultHotkeyConfig(SettingsInterface& si);
 
 	/// Clears all bindings for a given port.
 	void ClearPortBindings(SettingsInterface& si, u32 port);